I inspected my bees last night and noticed some uncapped pupae with purple eyes with partially chewed off or missing eyes/heads. The pupae could slide back and forth within the cells and appeared dried out, but were not crispy. They were white and not miss colored. Brood pattern was spotty, though I did not notice any miscolored larvae or sunken cappings. There was not a foul odor. I had a nearly fully capped shallow super on top (two deeps below). This was observed in the top deep). There were frames with pollen present in the deep.
Any idea what this could be?