If you do not have SHB back like the good old days, you can leave honey supers on hives until fall to extract all at once. But now, with SHB, I would not give them the extra room to run around and hide. You can place empties under the almost full boxes and pull the full ones when 90 to 100 percent capped. Once a box is pulled, you can store in the freezer or in bags after freezing (and drying). You can also just pull the fully capped frames out and replace also.