First, they may not have Nosema. Dysentery does not prove Try HBH (Honey Bee Healthy) instead of the fumigillan. Any feed will clear them out. HBH is a feed stimulant and will get some feed through them, plus a study from Australia indicates that Lemongrass Essential Oil (which is in HBH) will help with Nosema.
Or just feed them some watered down honey.
http://www.bushfarms.com/beespests.htm#nosemahttp://www.bushfarms.com/beesterms.htm#fumidil